Miloš Musil

Publications

• 2024

  VELECKÝ Jan, BEREZNÝ Matej, MUSIL Miloš, MAZURENKO Stanislav, BEDNÁŘ David and DAMBORSKÝ Jiří. BenchStab: A tool for automated querying of web-based stability predictors. Bioinformatics, vol. 2024, no. 9, pp. 1-8. ISSN 1367-4803.
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• 2023

  POLJOVKA Andrej, MUSIL Miloš, BEDNÁŘ David, CHOVANOVÁ Katarína, BAUEROVÁ-HLINKOVÁ Vladena, BELLOVÁ Jana, KOHÚTOVÁ Lenka, BARÁTH Peter and ZÁMOCKÝ Marcel. Comparison of Fungal Thermophilic and Mesophilic Catalase-Peroxidases for Their Antioxidative Properties. Antioxidants, vol. 12, no. 7, 2023, pp. 1-19. ISSN 2076-3921.
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  MUSIL Miloš, JEŽÍK Andrej, BORKO Simeon, DAMBORSKÝ Jiří and BEDNÁŘ David. FireProt 2.0: Web-based Platform for the Fully-Automated Design of Thermostable Proteins. Lyon, 2023.
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  MUSIL Miloš, JEŽÍK Andrej, HORÁČKOVÁ Jana, BORKO Simeon, KABOUREK Petr, DAMBORSKÝ Jiří and BEDNÁŘ David. FireProt 2.0: Web-based Platform for the Fully-Automated Design of Thermostable Proteins. Briefings in Bioinformatics, vol. 25, no. 1, 2023, pp. 1-10. ISSN 1467-5463.
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• 2022

  ZÁMOCKÝ Marcel, MUSIL Miloš, BANCHENKO Maksym, FERIANC Peter, CHOVANOVÁ Katarína, BARÁTH Peter, POLJOVKA Andrej and BEDNÁŘ David. Deep Insights into the Specific Evolution of Fungal Hybrid B Heme Peroxidases. Biology, vol. 11, no. 3, 2022, pp. 1-18. ISSN 2079-7737.
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  MUSIL Miloš, JEŽÍK Andrej, HAMŠÍKOVÁ Marie, ŠTOURAČ Jan, GALGONEK Jakub, EYRILMEZ Saltuk Mustafa, VONDRÁŠEK Jiří, DAMBORSKÝ Jiří and BEDNÁŘ David. Fully automated virtual screening pipeline of FDA-approved drugs using Caver Web. Computational and Structural Biotechnology Journal, vol. 20, no. 1, 2022, pp. 6512-6518. ISSN 2001-0370.
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  VELECKÝ Jan, HAMŠÍKOVÁ Marie, ŠTOURAČ Jan, MUSIL Miloš, DAMBORSKÝ Jiří, BEDNÁŘ David and MAZURENKO Stanislav. SoluProtMutDB: A manually curated database of protein solubility changes upon mutations. Computational and Structural Biotechnology Journal, vol. 20, no. 1, 2022, pp. 6339-6347. ISSN 2001-0370.
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• 2021

  PLANAS-IGLESIAS Joan, PINTO Gaspar P., MARQUES Sergio M., MUSIL Miloš, DAMBORSKÝ Jiří, ŠTOURAČ Jan and BEDNÁŘ David. Computational design of enzymes for biotechnological applications. Biotechnology Advances, vol. 47, no. 1, 2021, pp. 1-22. ISSN 0734-9750.
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  KHAN Rayyan T., MUSIL Miloš, ŠTOURAČ Jan, DAMBORSKÝ Jiří and BEDNÁŘ David. Fully Automated Ancestral Sequence Reconstruction using FireProtASR. Current Protocols, vol. 1, no. 2, 2021, pp. 1-5. ISSN 1934-3396.
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• 2020

  MUSIL Miloš, KHAN Rayyan T., BEIER Andy, ŠTOURAČ Jan, KONEGGER Hannes, DAMBORSKÝ Jiří and BEDNÁŘ David. FireProtASR: Web Server for Fully Automated Ancestral Sequence Reconstruction. Briefings in Bioinformatics, vol. 22, no. 4, 2020, pp. 1-11. ISSN 1467-5463.
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  ŠTOURAČ Jan, DÚBRAVA Juraj Ondrej, MUSIL Miloš, HORÁČKOVÁ Jana, MAZURENKO Stanislav, DAMBORSKÝ Jiří and BEDNÁŘ David. FireProtDB: Database of Manually Curated Protein Stability Data. Nucleic Acids Research, vol. 49, no. 1, 2020, pp. 319-324. ISSN 1362-4962.
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• 2019

  MUSIL Miloš, KONEGGER Hannes, HON Jiří, BEDNÁŘ David and DAMBORSKÝ Jiří. Computational Design of Stable and Soluble Biocatalysts. ACS Catalysis, vol. 9, no. 2, 2019, pp. 1033-1054. ISSN 2155-5435.
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• 2018

  BEERENS Koen, MAZURENKO Stanislav, KUNKA Antonín, MARQUES Sergio M., HANSEN Niels, MUSIL Miloš, CHALOUPKOVÁ Radka, WATERMAN Jitka, BREZOVSKÝ Jan, BEDNÁŘ David, PROKOP Zbyněk and DAMBORSKÝ Jiří. Evolutionary Analysis is a Powerful Complement to Energy Calculations Allowing Entropy-Driven Stabilization. ACS Catalysis, vol. 2018, no. 8, pp. 9420-9428. ISSN 2155-5435.
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  MUSIL Miloš, MARTÍNEK Tomáš and ZENDULKA Jaroslav. FireProt: web server for automated design of thermostable proteins. In: DAZ & WIKT 2018 Proceedings. Brno, 2018, pp. 1-4.
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• 2017

  MUSIL Miloš, ŠTOURAČ Jan, BENDL Jaroslav, BREZOVSKÝ Jan, PROKOP Zbyněk, ZENDULKA Jaroslav, MARTÍNEK Tomáš, BEDNÁŘ David and DAMBORSKÝ Jiří. FireProt: web server for automated design of thermostable proteins. Nucleic Acids Research, vol. 45, no. 1, 2017, pp. 393-399. ISSN 1362-4962.
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• 2016

  BENDL Jaroslav, ŠTOURAČ Jan, ŠEBESTOVÁ Eva, VÁVRA Ondřej, MUSIL Miloš, BREZOVSKÝ Jan and DAMBORSKÝ Jiří. HotSpot Wizard 2.0: Automated Design of Site-specific Mutations and Smart Libraries in Protein Engineering. Nucleic Acids Research, vol. 44, no. 1, 2016, pp. 479-487. ISSN 1362-4962.
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  BENDL Jaroslav, MUSIL Miloš, ŠTOURAČ Jan, ZENDULKA Jaroslav, DAMBORSKÝ Jiří and BREZOVSKÝ Jan. PredictSNP2: A unified platform for accurately evaluating SNP effects by exploiting the different characteristics of variants in distinct genomic regions. PLoS Computational Biology, vol. 12, no. 5, 2016, pp. 1-18. ISSN 1553-7358.
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