Matej Lexa

Publications

• 2024

  SCHWARZEROVÁ Jana, HURTA Martin, BARTOŇ Vojtěch, LEXA Matej, WALTHER Dirk, PROVAZNÍK Valentine and WECKWERTH Wolfram. A perspective on genetic and polygenic risk scores-advances and limitations and overview of associated tools. Briefings in Bioinformatics, vol. 25, no. 3, 2024, pp. 1-11. ISSN 1467-5463.
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• 2020

  LABUDOVÁ Dominika, HON Jiří and LEXA Matej. pqsfinder web: G-quadruplex prediction using optimized pqsfinder algorithm. Bioinformatics, vol. 36, no. 8, 2020, pp. 2584-2586. ISSN 1367-4803.
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• 2018

  TOKAN Viktor, PUTEROVÁ Janka, LEXA Matej and KEJNOVSKÝ Eduard. Quadruplex DNA in long terminal repeats in maize LTR retrotransposons inhibits the expression of a reporter gene in yeast. BMC Genomics, vol. 19, no. 1, 2018, pp. 1-11. ISSN 1471-2164.
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• 2017

  HON Jiří, MARTÍNEK Tomáš, ZENDULKA Jaroslav and LEXA Matej. pqsfinder: an exhaustive and imperfection-tolerant search tool for potential quadruplex-forming sequences in R. Bioinformatics, vol. 33, no. 21, 2017, pp. 3373-3379. ISSN 1367-4803.
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  HON Jiří, LEXA Matej, MARTÍNEK Tomáš and ZENDULKA Jaroslav. pqsfinder: imperfection-tolerant identification of potential quadruplex-forming sequences in R. ISMB/ECCB 2017. Praha, 2017.
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• 2016

  BRÁZDOVÁ Marie, TICHÝ Vlastimil, HELMA Robert, BAŽANTOVÁ Pavla, POLÁŠKOVÁ Alena, KREJČÍ Aneta, PETR Marek, NAVRÁTILOVÁ Lucie, TICHÁ Olga, NEJEDLÝ Karel, BENNINK Martin L., SUBRAMANIAM Vinod, BÁBKOVÁ Zuzana, MARTÍNEK Tomáš, LEXA Matej and ADÁMIK Matej. p53 Specifically Binds Triplex DNA In Vitro and in Cells. PLoS ONE, vol. 11, no. 12, 2016, pp. 1-25. ISSN 1932-6203.
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• 2014

  LEXA Matej, ŠTEFLOVÁ Pavlína, MARTÍNEK Tomáš, VORLÍČKOVÁ Michaela, VYSKOT Boris and KEJNOVSKÝ Eduard. Guanine quadruplexes are formed by specific regions of human transposable elements. BMC Genomics, vol. 15, no. 1032, 2014, pp. 1-12. ISSN 1471-2164.
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  LEXA Matej, MARTÍNEK Tomáš and BRÁZDOVÁ Marie. Uneven distribution of potential triplex sequences in the human genome: In silico study using the R/Bioconductor package triplex. In: Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. Angers: SciTePress - Science and Technology Publications, 2014, pp. 80-88. ISBN 978-989-758-012-3.
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• 2013

  BRÁZDOVÁ Marie, MARTÍNEK Tomáš and LEXA Matej. In silico search for secondary structures in p53 target genes using R/Bioconductor. In: ITAT 2013: Information Technologies - Applications and Theory. Donovaly: CreativeSpace Independent Publishing Platform, 2013, pp. 42-46. ISBN 978-1-4909-5208-6.
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  HON Jiří, MARTÍNEK Tomáš, RAJDL Kamil and LEXA Matej. Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences. Bioinformatics, vol. 29, no. 15, 2013, pp. 1900-1901. ISSN 1367-4803.
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• 2011

  LEXA Matej, MARTÍNEK Tomáš, BURGETOVÁ Ivana, KOPEČEK Daniel and BRÁZDOVÁ Marie. A dynamic programming algorithm for identification of triplex-forming sequences. Bioinformatics, vol. 27, no. 18, 2011, pp. 2510-2517. ISSN 1367-4803.
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  MARTÍNEK Tomáš and LEXA Matej. Architecture Model for Approximate Tandem Repeat Detection. In: 22nd IEEE International Conference on Application-specific Systems, Architectures and Processors. Santa Monica, California: IEEE Computer Society, 2011, pp. 239-242. ISBN 978-1-4577-1290-6.
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• 2010

  RUDOLFOVÁ Ivana, ZENDULKA Jaroslav and LEXA Matej. Clustering of Protein Substructures for Discovery of a Novel Class of Sequence-Structure Fragments. In: Information Technology in Bio- and Medical Informatics, ITBAM 2010. Lecture Notes in Computer Science, vol. 6266. Heidelberg: Springer Verlag, 2010, pp. 94-101. ISBN 978-3-642-15019-7.
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  BURGETOVÁ Ivana, ZENDULKA Jaroslav and LEXA Matej. Clustering Techniques for Protein Fragments Analysis. Brno: Faculty of Information Technology BUT, 2010. ISBN 978-80-214-4207-8.
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  MARTÍNEK Tomáš and LEXA Matej. Hardware Acceleration of Approximate Tandem Repeat Detection. In: IEEE Symposium on Field-Programmable Custom Computing Machines. Charlotte: IEEE Computer Society, 2010, pp. 79-86. ISBN 978-0-7695-4056-6.
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• 2009

  MARTÍNEK Tomáš, LEXA Matej and VOŽENÍLEK Jan. Architecture model for approximate palindrome detection. In: 2009 IEEE Symposium on Design and Diagnostics of Electronic Circuits and Systems. Liberec: IEEE Computer Society, 2009, pp. 90-95. ISBN 978-1-4244-3339-1.
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• 2008

  MARTÍNEK Tomáš and LEXA Matej. Hardware Acceleration of Approximate Palindromes Searching. In: The International Conference on Field-Programmable Technology. Taipei: IEEE Computer Society, 2008, pp. 65-72. ISBN 978-1-4244-2796-3.
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• 2007

  MARTÍNEK Tomáš, LEXA Matej, BECK Patrik and FUČÍK Otto. Automatic Generation of Circuits for Approximate String Matching. In: 2007 IEEE Design and Diagnostics of Electronic Circuits and Systems. Krakow: IEEE Computer Society, 2007, pp. 203-208. ISBN 1-4244-1161-0.
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  LEXA Matej, MARTÍNEK Tomáš, BECK Patrik, FUČÍK Otto, VALLE Giorgio and ZARA Ivano. Genomic PCR simulation with hardware-accelerated approximate sequence matching. In: 21st European Conference on Modelling and Simulation. Praha: European Council for Modelling and Simulation, 2007, pp. 333-338. ISBN 978-0-9553018-2-7.
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• 2006

  MARTÍNEK Tomáš, LEXA Matej, KOŘENEK Jan and FUČÍK Otto. A flexible technique for the automatic design of approximate string matching architectures. In: Proc. of 2006 IEEE Design and Diagnostics of Electronic Circuits and Systems Workshop. Praha: IEEE Computer Society, 2006, pp. 83-84. ISBN 1-4244-0184-4.
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