Project Details

Návrh, optimalizace a evaluace aplikačně specifických počítačových systémů

Project Period: 1. 3. 2020 - 31. 12. 2022

Project Type: grant

Code: FIT-S-20-6309

Agency: Brno University of Technology

Program: Vnitřní projekty VUT

English title
Design, Optimization and Evaluation of Application Specific Computer Systems
Type
grant
Keywords

field programmable gate array, parallel architecture, optimization, evolutionary design, simulation, embedded system

Abstract

Application-specific computer systems should preferably be designed using fully automated methods that lead to highly optimized circuit and program solutions that can be seamlessly parallelized (to maximize performance) or approximated (to reduce power consumption). The aim of the project is to design and verify on typical applications new algorithms and computing platforms applicable in the design, optimization and implementation of highly application-specific computing systems.

Team members
Sekanina Lukáš, prof. Ing., Ph.D. (UPSY FIT VUT) , research leader
Bardonek Petr, Ing. (UPSY FIT VUT)
Bidlo Michal, doc. Ing., Ph.D. (UPSY FIT VUT)
Bordovský Gabriel, Ing. (UPSY FIT VUT)
Budiský Jakub, Ing. (UPSY FIT VUT)
Crha Adam, Ing., Ph.D. (UPSY FIT VUT)
Čekan Ondřej, Ing., Ph.D. (UPSY FIT VUT)
Drahošová Michaela, Ing., Ph.D. (UPSY FIT VUT)
Fučík Otto, doc. Dr. Ing. (UPSY FIT VUT)
Fukač Tomáš, Ing. (UPSY FIT VUT)
Hodaň David, Ing. (UPSY FIT VUT)
Husa Jakub, Ing., Ph.D. (UPSY FIT VUT)
Jaroš Jiří, doc. Ing., Ph.D. (UPSY FIT VUT)
Jaroš Marta, Ing., PhD. (UPSY FIT VUT)
Kadlubiak Kristián, Ing. (UPSY FIT VUT)
Kekely Lukáš, Ing., Ph.D. (UPSY FIT VUT)
Kekely Michal, Ing. (UPSY FIT VUT)
Kešner Filip, Ing. (UPSY FIT VUT)
Kocnová Jitka, Ing., Ph.D. (UPSY FIT VUT)
Krčma Martin, Ing. (UPSY FIT VUT)
Kučera Jan, Ing. (UPSY FIT VUT)
Lojda Jakub, Ing., Ph.D. (UPSY FIT VUT)
Martínek Tomáš, doc. Ing., Ph.D. (UPSY FIT VUT)
Matoušek Denis, Ing. (UPSY FIT VUT)
Mrázek Vojtěch, Ing., Ph.D. (UPSY FIT VUT)
Nevoral Jan, Ing., Ph.D. (UPSY FIT VUT)
Orsák Michal, Ing. (UPSY FIT VUT)
Pánek Richard, Ing. (UPSY FIT VUT)
Podivínský Jakub, Ing., Ph.D. (UPSY FIT VUT)
Růžička Richard, doc. Ing., Ph.D., MBA (UPSY FIT VUT)
Smatana Stanislav, Ing. (UPSY FIT VUT)
Strnadel Josef, Ing., Ph.D. (UPSY FIT VUT)
Szurman Karel, Ing., Ph.D. (UPSY FIT VUT)
Šimek Václav, Ing. (UPSY FIT VUT)
Tisovčík Peter, Ing. (UPSY FIT VUT)
Vašíček Zdeněk, doc. Ing., Ph.D. (UPSY FIT VUT)
Vaverka Filip, Ing. (UPSY FIT VUT)
Vrána Roman, Ing. (UPSY FIT VUT)
Zachariášová Marcela, Ing., Ph.D. (UPSY FIT VUT)
Publications

2023

  • JAROŠ Marta and JAROŠ Jiří. Optimization of Execution Parameters of Moldable Ultrasound Workflows Under Incomplete Performance Data. In: Job Scheduling Strategies for Parallel Processing. Lecture Notes in Computer Science, LNCS 13592, vol. 13592. Virtual Event: Springer Nature Switzerland AG, 2023, pp. 152-171. ISBN 978-3-031-22697-7. Detail

2022

  • STRNADEL Josef. Analyzing Dynamic Aspects of AxC Systems by Means of Statistical Model Checking. In: Proceedings of 2022 25th International Symposium on Design and Diagnostics of Electronic Circuits and Systems (DDECS). Prague: Institute of Electrical and Electronics Engineers, 2022, pp. 88-93. ISBN 978-1-6654-9431-1. Detail
  • AUBRY Jean-Francois, BATES Oscar, BOEHM Christian, PAULY Kim Butts, CHRISTENSEN Douglas, CUETO Carlos, GÉLAT Pierre, GUASCH Lluis, JAROŠ Jiří, JING Yun, JONES Rebecca, LI Ningrui, MARTY Patrick, MONTANARO Hazael, NEUFELD Esra, PICHARDO Samuel, PINTON Gianmarco, PULKKINEN Aki, STANZIOLA Antonio, THIELSCHER Axel, TREEBY Bradley E. and VAN 't Wout Elwin. Benchmark problems for transcranial ultrasound simulation: Intercomparison of compressional wave models. Journal of the Acoustical Society of America, vol. 152, no. 2, 2022, pp. 1003-1019. ISSN 1520-8524. Detail
  • KUNKA Antonín, LACKO Dávid, ŠTOURAČ Jan, DAMBORSKÝ Jiří, PROKOP Zbyněk and MAZURENKO Stanislav. CalFitter 2.0: Leveraging the power of singular value decomposition to analyse protein thermostability. Nucleic Acids Research, vol. 50, no. 1, 2022, pp. 145-151. ISSN 1362-4962. Detail
  • OLŠÁK Ondřej and JAROŠ Jiří. Comparison of SpFFT and FFTW3 library. Soláň, 2022. Detail
  • JAWED Soyiba and MALIK Aamir Saeed. Deep learning based diagnosis of alcohol use disorder (AUD) using EEG. In: {2022 IEEE 12th International Conference on Consumer Electronics (ICCE-Berlin). Berlin: Institute of Electrical and Electronics Engineers, 2022, pp. 1-5. ISBN 978-1-6654-5676-0. Detail
  • VÁLEK Matěj and SEKANINA Lukáš. Evolutionary Approximation in Non-Local Means Image Filters. In: 2022 IEEE International Conference on Systems, Man, and Cybernetics (SMC). Praha: Institute of Electrical and Electronics Engineers, 2022, pp. 2759-2766. ISBN 978-1-6654-5258-8. Detail
  • KALKREUTH Roman, DAL Piccol Sotto Léo Françoso and VAŠÍČEK Zdeněk. Graph-based Genetic Programming. In: GECCO 2022 Companion - Proceedings of the 2022 Genetic and Evolutionary Computation Conference. Boston: Association for Computing Machinery, 2022, pp. 958-982. ISBN 978-1-4503-9268-6. Detail
  • SEKANINA Lukáš, VAŠÍČEK Zdeněk and MRÁZEK Vojtěch. Inexact Arithmetic Operators. Approximate Computing Techniques. Cham: Springer International Publishing, 2022, pp. 81-107. ISBN 978-3-030-94704-0. Detail
  • JAROŠ Marta and JAROŠ Jiří. k-Dispatch's Performance Modules for Advanced Workflow Submission. Soláň, 2022. Detail
  • JAROŠ Marta, TREEBY Bradley E. and JAROŠ Jiří. k-Plan: from the Hospital to the Cluster and back. Ostrava, 2022. Detail
  • KLEPÁRNÍK Petr, ZEMČÍK Pavel, TREEBY Bradley E. and JAROŠ Jiří. On-the-Fly Calculation of Time-Averaged Acoustic Intensity in Time-Domain Ultrasound Simulations Using a k-Space Pseudospectral Method. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, vol. 69, no. 10, 2022, pp. 2917-2929. ISSN 1525-8955. Detail
  • QADRI Syed Safi Uddin, ARIF Muhammad, NASEEM Imran and MOINUDDIN Muhammad. Robust Incremental Least Mean Square Algorithm With Dynamic Combiner. IEEE Access, vol. 10, no. 10, 2022, pp. 75135-75143. ISSN 2169-3536. Detail
  • RŮŽIČKA Richard and ŠIMEK Václav. Technology Mapping for PAIG Optimized Polymorphic Circuits. In: Proceeding of 25th Euromicro Conference on Digital System Design 2022 (DSD'22). Gran Canaria: IEEE Computer Society, 2022, pp. 801-808. ISBN 978-1-6654-7404-7. Detail

2021

  • SHAFIQUE Muhammad, STEININGER Andreas, SEKANINA Lukáš, KRSTIĆ Miloš, STOJANOVIC Goran and MRÁZEK Vojtěch, ed. 24th International Symposium on Design and Diagnostics of Electronic Circuits & Systems. USA: Institute of Electrical and Electronics Engineers, 2021. ISBN 978-1-6654-3595-6. Detail
  • LOJDA Jakub, PODIVÍNSKÝ Jakub, ČEKAN Ondřej and KOTÁSEK Zdeněk. Accelerating Tests of Arithmetic Circuits Through On-FPGA Stimuli Generation and Their Reduction. In: International Conference on Electrical, Computer, Communications and Mechatronics Engineering, ICECCME 2021. Mauritius: Institute of Electrical and Electronics Engineers, 2021, pp. 1628-1633. ISBN 978-1-6654-1262-9. Detail
  • JAROŠ Marta, TREEBY Bradley E. and JAROŠ Jiří. Adaptive Execution Planning in Biomedical Workflow Management Systems. The Platform for Advanced Scientific Computing (PASC) Conference 2021. Geneva, 2021. Detail
  • LOJDA Jakub, PÁNEK Richard and KOTÁSEK Zdeněk. Automatic Design of Fault-Tolerant Systems for VHDL and SRAM-based FPGAs. In: Proceedings - 2021 24th Euromicro Conference on Digital System Design, DSD 2021. Palermo: Institute of Electrical and Electronics Engineers, 2021, pp. 549-552. ISBN 978-1-6654-2703-6. Detail
  • LOJDA Jakub, PÁNEK Richard and KOTÁSEK Zdeněk. Automatically-Designed Fault-Tolerant Systems: Failed Partitions Recovery. In: 2021 IEEE East-West Design and Test Symposium, EWDTS 2021 - Proceedings. Batumi: Institute of Electrical and Electronics Engineers, 2021, pp. 26-33. ISBN 978-1-6654-4503-0. Detail
  • ZWINSOVÁ Barbora, PETROV Viacheslav, HRIVŇÁKOVÁ Martina, SMATANA Stanislav, MICENKOVÁ Lenka, KAZDOVÁ Natálie, POPOVICI Vlad, HRSTKA Roman, ŠEFR Roman, BENCSIKOVÁ Beatric, ZDRAŽILOVÁ-DUBSKÁ Lenka, BRYCHTOVÁ Veronika, NENUTIL Rudolf, VÍDEŇSKÁ Petra and BUDINSKÁ Eva. Colorectal tumour mucosa microbiome is enriched in oral pathogens and defines three subtypes that correlate with markers of tumour progression. Cancers, vol. 13, no. 19, 2021, pp. 1-25. ISSN 2072-6694. Detail
  • CHLEBÍK Jakub and JAROŠ Jiří. Distributed Evolutionary Design of HIFU Treatment Plans. GECCO 2021 Companion - Proceedings of the 2021 Genetic and Evolutionary Computation Conference Companion. Lille: Association for Computing Machinery, 2021. ISBN 978-1-4503-8351-6. Detail
  • BARBARESCHI Mario, BOSIO Alberto, SEKANINA Lukáš and BRAUN Claus. Editorial: Special issue on Advancing on Approximate Computing: Methodologies, Architectures and Algorithms. Future Generation Computer Systems, vol. 124, no. 1, 2021. ISSN 0167-739X. Detail
  • KOŘENEK Jan and VRÁNA Roman. Efficient Acceleration of Decision Tree Algorithms for Encrypted Network Traffic Analysis. In: Proceedings - 2021 24th International Symposium on Design and Diagnostics of Electronic Circuits and Systems, DDECS 2021. IEEE International Symposium on Design and Diagnostics of Electronic Circuits & Systems. Vídeň: Institute of Electrical and Electronics Engineers, 2021, pp. 115-118. ISBN 978-1-6654-3595-6. Detail
  • JAROŠ Marta, SASÁK Tomáš, TREEBY Bradley E. and JAROŠ Jiří. Estimation of Execution Parameters for k-Wave Simulations. In: High Performance Computing in Science and Engineering. HPCSE 2019. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Cham: Springer Nature Switzerland AG, 2021, pp. 116-134. ISBN 978-3-030-67076-4. Detail
  • FUKAČ Tomáš, MATOUŠEK Jiří, KOŘENEK Jan and KEKELY Lukáš. Increasing Memory Efficiency of Hash-Based Pattern Matching for High-Speed Networks. In: 2021 International Conference on Field-Programmable Technology, ICFPT 2021. Auckland: Institute of Electrical and Electronics Engineers, 2021, pp. 185-193. ISBN 978-1-6654-2010-5. Detail
  • JAROŠ Marta and JAROŠ Jiří. k-Dispatch's Performance Modules for Advanced Workflow Submission. 5th Users' Conference of IT4Innovations. Ostrava, 2021. Detail
  • PÁNEK Richard, LOJDA Jakub, PODIVÍNSKÝ Jakub and KOTÁSEK Zdeněk. Reliability Analysis of the FPGA Control System with Reconfiguration Hardening. In: Proceedings - 2021 24th Euromicro Conference on Digital System Design, DSD 2021. Palermo: Institute of Electrical and Electronics Engineers, 2021, pp. 553-556. ISBN 978-1-6654-2703-6. Detail
  • FUKAČ Tomáš, KOŘENEK Jan and MATOUŠEK Jiří. Scalability of Hash-based Pattern Matching for High-speed Network Security and Monitoring. In: Proceedings - IEEE Symposium on Computers and Communications. Athens: Institute of Electrical and Electronics Engineers, 2021, pp. 1-6. ISBN 978-1-6654-2744-9. Detail
  • LOJDA Jakub, PÁNEK Richard, PODIVÍNSKÝ Jakub, ČEKAN Ondřej, KRČMA Martin and KOTÁSEK Zdeněk. Testing Embedded Software Through Fault Injection: Case Study on Smart Lock. In: 2021 IEEE 22nd Latin American Test Symposium, LATS 2021. Punta del Este: Institute of Electrical and Electronics Engineers, 2021, pp. 80-85. ISBN 978-1-6654-2057-0. Detail
  • ČEJKA Tomáš, HYNEK Karel, SOUKUP Dominik and TISOVČÍK Peter. Towards Evaluating Quality of Datasets for Network Traffic Domain. In: Proceedings of the 17th International Conference on Network Service Management (CNSM 2021). Izmir: Institute of Electrical and Electronics Engineers, 2021, pp. 264-268. ISBN 978-3-903176-36-2. Detail

2020

  • COLUCCI Alessio, MARCHISIO Alberto, BUSSOLINO Beatrice, MRÁZEK Vojtěch, MARTINA Mauricio, MASERA Guido and SHAFIQUE Muhammad. A Fast Design Space Exploration Framework for the Deep Learning Accelerators: Work-in-Progress. In: 2020 International Conference on Hardware/Software Codesign and System Synthesis (CODES+ISSS)}. Singapore: Institute of Electrical and Electronics Engineers, 2020, pp. 34-36. ISBN 978-1-7281-9198-0. Detail
  • LOJDA Jakub, PÁNEK Richard, PODIVÍNSKÝ Jakub, ČEKAN Ondřej, KRČMA Martin and KOTÁSEK Zdeněk. Analysis of Software-Implemented Fault Tolerance: Case Study on Smart Lock. In: 2020 IEEE East-West Design and Test Symposium, EWDTS 2020 - Proceedings. Varna: Institute of Electrical and Electronics Engineers, 2020, pp. 24-28. ISBN 978-1-7281-9899-6. Detail
  • LOJDA Jakub, PODIVÍNSKÝ Jakub, ČEKAN Ondřej, PÁNEK Richard, KRČMA Martin and KOTÁSEK Zdeněk. Automatic Design of Reliable Systems Based on the Multiple-choice Knapsack Problem. In: Proceedings - 2020 23rd International Symposium on Design and Diagnostics of Electronic Circuits and Systems, DDECS 2020. Novi Sad: Institute of Electrical and Electronics Engineers, 2020, pp. 1-4. ISBN 978-1-7281-9938-2. Detail
  • KUČERA Jan, BEN Basat Ran, KUKA Mário, ANTICHI Gianni, YU Minlan and MITZENMACHER Michael. Detecting Routing Loops in the Data Plane. In: CoNEXT 2020 - Proceedings of the 16th International Conference on Emerging Networking EXperiments and Technologies. New York, NY: Association for Computing Machinery, 2020, pp. 466-473. ISBN 978-1-4503-7948-9. Detail
  • ADAMOVSKÝ Ondřej, BUERGER Amanda N., VESPALCOVÁ Hana, SOHAG Shahadur R., HANLON Amy T., GINN Pamela E., CRAFT Serena L., SMATANA Stanislav, BUDINSKÁ Eva, PERSICO Maria, BISESI Joseph Jr. H. and MARTYNIUK Christopher J. Evaluation of microbiome-host relationships in the zebrafish gastrointestinal system reveals adaptive immunity is a target of bis(2-ethylhexyl) phthalate (DEHP) exposure. Environmental Science & Technology, vol. 54, no. 9, 2020, pp. 5719-5728. ISSN 1520-5851. Detail
  • LOJDA Jakub, PÁNEK Richard, PODIVÍNSKÝ Jakub, ČEKAN Ondřej, KRČMA Martin and KOTÁSEK Zdeněk. Hardening of Smart Electronic Lock Software against Random and Deliberate Faults. In: Proceedings - Euromicro Conference on Digital System Design, DSD 2020. Kranj: Institute of Electrical and Electronics Engineers, 2020, pp. 680-683. ISBN 978-1-7281-9535-3. Detail
  • FUKAČ Tomáš, KOŠAŘ Vlastimil, KOŘENEK Jan and MATOUŠEK Jiří. Increasing Throughput of Intrusion Detection Systems by Hash-Based Short String Pre-Filter. In: Proceedings - Conference on Local Computer Networks, LCN. Sydney (virtual): Institute of Electrical and Electronics Engineers, 2020, pp. 509-514. ISBN 978-1-7281-7158-6. Detail
  • CRHA Adam, ŠIMEK Václav and RŮŽIČKA Richard. Multi-output cuts influence on optimization of polymorphic circuits based on PAIG rewriting. In: 2020 23rd International Symposium on Design and Diagnostics of Electronic Circuits & Systems (DDECS). Novi Sad: Institute of Electrical and Electronics Engineers, 2020, pp. 1-6. ISBN 978-1-7281-9938-2. Detail
  • ADAMOVSKÝ Ondřej, BISESI Joseph Jr. H., BOYDA Jonna, BUDINSKÁ Eva, CRAFT Serena L., GINN Pamela E., HUA Qing, KOZUCH Marianne, MARTYNIUK Christopher J., PERSICO Maria, SCHMIDT Jordan T., SMATANA Stanislav and VESPALCOVÁ Hana. Microbiome analysis and predicted relative metabolomic turnover suggest bacterial heme and selenium metabolism are altered in the gastrointestinal system of zebrafish (Danio rerio) exposed to the organochlorine dieldrin. Environmental Pollution, vol. 2021, no. 268, 2020, pp. 115715-115726. ISSN 1873-6424. Detail
  • BIDLO Michal and ŽUFAN Petr. On Comparison of Some Representations for the Evolution of Quantum Operators. In: 2020 IEEE Symposium Series on Computational Intelligence, SSCI 2020. Canberra: Institute of Electrical and Electronics Engineers, 2020, pp. 2101-2108. ISBN 978-1-7281-2547-3. Detail
  • NEVORAL Jan, ŠIMEK Václav and RŮŽIČKA Richard. Power Consumption Analysis of New Generation of Polymorphic Gates. In: 23rd International Symposium on Design and Diagnostics of Electronic Circuits and Systems, DDECS 2020. Novi Sad: Institute of Electrical and Electronics Engineers, 2020, pp. 1-6. ISBN 978-1-7281-9938-2. Detail
  • PÁNEK Richard, LOJDA Jakub, PODIVÍNSKÝ Jakub and KOTÁSEK Zdeněk. Reliability Analysis of Reconfiguration Controller for FPGA-Based Fault Tolerant Systems: Case Study. In: 2020 International Symposium on VLSI Design, Automation, and Test (VLSI-DAT) : proceedings of technical papers. Hsinchu: IEEE Computer Society, 2020, pp. 121-124. ISBN 978-1-7281-6083-2. Detail
  • HU Ting, NICOLAU Miguel and SEKANINA Lukáš. Special issue on highlights of genetic programming 2019 events. Genetic Programming and Evolvable Machines, vol. 21, no. 3, 2020. ISSN 1389-2576. Detail
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