Project Details

Biomarker - Vytipování markerů, screening a časná diagnostika nádorových onemocnění pomocí vysoce automatizovaného zpracování multidimenzionálních biomedicínských obrazů

Project Period: 1. 7. 2006 - 30. 6. 2011

Project Type: grant

Code: 2B06052

Agency: Ministry of Education, Youth and Sports Czech Republic

Program: Zdravý a kvalitní život

English title
Biomarker - Determination of markers, screening and early diagnostics of cancer diseases using highly automated processing of multidimensional biomedical images
Type
grant
Keywords

image processing, bioinformatics

Abstract

The project aims at the determination of markers, screening and early diagnostics of cancer diseases using highly automated processing of multidimensional biomedical images

Team members
Smrž Pavel, doc. RNDr., Ph.D. (UPGM FIT VUT) , research leader
Zemčík Pavel, prof. Dr. Ing. (UPGM FIT VUT) , team leader
Publications

2012

  • SEEMAN Michal and ZEMČÍK Pavel. Histogram Smoothing for Bilateral Filter. In: GraVisMa 2009. Plzeň: University of West Bohemia in Pilsen, 2012, pp. 145-148. ISBN 978-80-86943-90-9. Detail

2011

  • ZEMČÍK Pavel, PŘIBYL Bronislav, HEROUT Adam and SEEMAN Michal. Accelerated Image Resampling for Geometry Correction. Journal of Real-Time Image Processing, vol. 6, no. 3, 2011, pp. 1-9. ISSN 1861-8200. Detail
  • ZEMČÍK Pavel, PŘIBYL Bronislav, ŽÁDNÍK Martin and KORČEK Pavol. Fast and Energy Efficient Image Processing Algorithms using FPGA. In: Proceedings of the 21th Conference on Field Programmable Logic and Applications Workshop. Chania: Institute of Electrical and Electronics Engineers, 2011, p. 2. ISBN 978-0-7695-4529-5. Detail
  • SEEMAN Michal, ZEMČÍK Pavel, JURÁNEK Roman and HEROUT Adam. Fast bilateral filter for HDR imaging. Journal of Visual Communication and Image Representation, vol. 2012, no. 1, 2011, p. 6. ISSN 1047-3203. Detail
  • PŘIBYL Bronislav and ZEMČÍK Pavel. Simple Single View Scene Calibration. In: Advanced Concepts for Intelligent Vision Systems. Lecture Notes in Computer Science. Ghent: Springer Verlag, 2011, pp. 748-759. ISBN 978-3-642-23686-0. ISSN 0302-9743. Detail

2010

  • ŠILHAVÁ Jana and SMRŽ Pavel. Combination of Logistic Regression and Boosting to Predict Disease Outcome. Applied Statistics 2010 International Conference. Ribno, Bled, 2010. ISBN 978-961-92487-4-4. Detail
  • ŠILHAVÁ Jana and SMRŽ Pavel. Gene Ontology Driven Feature Filtering from Microarray Data. In: Znalosti 2010. 9th Annual Conference, Jindřichův Hradec. Jindřichův Hradec, 2010, pp. 263-266. ISBN 978-80-245-1636-3. Detail
  • ŠILHAVÁ Jana and SMRŽ Pavel. Improved Disease Outcome Prediction Based on Microarray and Clinical Data Combination and Pre-validation. In: Biomedical Engineering Systems and Technologies. Valencia: Springer Verlag, 2010, pp. 36-41. ISBN 978-3-540-92218-6. Detail

2009

  • ŠILHAVÁ Jana and SMRŽ Pavel. Additional Predictive Value of Microarray Data Compared to Clinical Variables. In: PRIB 2009, 4th IAPR International Conference on Pattern Recognition in Bioinformatics. Sheffield: University of Sheffield, 2009, pp. 1-6. ISBN 978-0-9563399-0-4. Detail

2008

  • SMRŽ Pavel, ŠILHAVÁ Jana, KLÉMA Jiří and ŽELEZNÝ Filip. Gene Expression Data Mining Guided by Genomic Background Knowledge. In: SOFSEM 2008: Theory and Practice of Computer Science. Nový Smokovec: Springer Verlag, 2008, pp. 101-111. ISBN 978-80-7097-697-5. Detail
  • HRADIŠ Michal, HEROUT Adam and ZEMČÍK Pavel. Local Rank Patterns - Novel Features for Rapid Object Detection. In: Proceedings of International Conference on Computer Vision and Graphics 2008. Lecture Notes in Computer Science. Heidelberg: Springer Verlag, 2008, pp. 1-12. ISSN 0302-9743. Detail

2007

  • SMRŽ Pavel and ŠILHAVÁ Jana. A Framework for Microarray Data Mining and Processing. In: Information and Intelligent Systems. 18th International Conference. Varaždin, 2007, pp. 337-343. ISBN 978-953-607130-2. Detail
  • PŘIBYL Bronislav and SEEMAN Michal. Precise Image Resampling for Optics Geometry Correction. In: Digital Technologies 2007. Žilina: Faculty of Electrical Engineering of Zilina Univerzity, 2007, pp. 1-6. Detail
Products

2011

  • Images iterative filtering tool using deconvolutional approach, software, 2011
    Authors: Štancl Vít Detail

2009

  • Generator of Algebraic Expressions for Classification, software, 2009
    Authors: Juránek Roman, Zemčík Pavel Detail

2008

  • Fast Bilateral Filter, software, 2008
    Authors: Seeman Michal, Zemčík Pavel Detail

2007

  • Separable Resampling, software, 2007
    Authors: Přibyl Bronislav, Seeman Michal, Zemčík Pavel Detail
  • Volume data frequency analysis tool, software, 2007
    Authors: Seeman Michal Detail
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