Publication Details

Constructing Phylogenetic Trees Based on Intra-Group Analysis of Human Mitochondrial DNA

VOGEL Ivan, ZEDEK František and OČENÁŠEK Pavel. Constructing Phylogenetic Trees Based on Intra-Group Analysis of Human Mitochondrial DNA. In: Human Interface and the Management of Information. Interacting with Information. Lecture Notes in Computer Science, vol. 6771. Berlin Heidelberg: Springer Verlag, 2011, pp. 165-169. ISBN 978-3-642-21792-0. ISSN 0302-9743.
Czech title
Konstrukce fylogenetických stromů na bázi vnitroskupinové analýzy lidské mitochondriální DNA
Type
conference paper
Language
english
Authors
Vogel Ivan, Ing., Ph.D. (FIT BUT)
Zedek František, Mgr., Ph.D. (SCI MUNI)
Očenášek Pavel, Mgr. Ing., Ph.D. (DIFS FIT BUT)
Keywords

intra-group analysis, substitution model, position-specific
clustering vector, mtDNA, population divergence, phylogenetic tree,
neighbor joining

Abstract

This paper describes a modified algorithm for inferring phylogenetic trees based on distance techniques. The input of the algorithm consists of predefined clusters of data. It uses a usual agglomerative approach, however it involves a novel technique for distance matrix creation as the task of clustering predefined groups of human mitochondrial DNA sequences should be fulfilled.

Published
2011
Pages
165-169
Journal
Lecture Notes in Computer Science, vol. 6771, no. 1, ISSN 0302-9743
Proceedings
Human Interface and the Management of Information. Interacting with Information
Series
Lecture Notes in Computer Science
Conference
HCII 2011, Orlando, US
ISBN
978-3-642-21792-0
Publisher
Springer Verlag
Place
Berlin Heidelberg, DE
DOI
10.1007/978-3-642-21793-7_20
EID Scopus
2-s2.0-79960338966
BibTeX 
@INPROCEEDINGS{FITPUB9494,
   author = "Ivan Vogel and Franti\v{s}ek Zedek and Pavel O\v{c}en\'{a}\v{s}ek",
   title = "Constructing Phylogenetic Trees Based on Intra-Group Analysis of Human Mitochondrial DNA",
   pages = "165--169",
   booktitle = "Human Interface and the Management of Information. Interacting with Information",
   series = "Lecture Notes in Computer Science",
   journal = "Lecture Notes in Computer Science",
   volume = 6771,
   number = 1,
   year = 2011,
   location = "Berlin Heidelberg, DE",
   publisher = "Springer Verlag",
   ISBN = "978-3-642-21792-0",
   ISSN = "0302-9743",
   doi = "10.1007/978-3-642-21793-7\_20",
   language = "english",
   url = "https://www.fit.vut.cz/research/publication/9494"
}
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