Thesis Details
Porovnání a převod databází signálních drah
The main topic of this work are comparison and transformations of pathway databases. Large part is dedicated to databases KEGG and BioCarta. In work are described formats of provided data. In process of searching for overlapping pathways between databases are used clustering, edit distance, NCBI gene numbers and equivalent relationships comparison. The system was written in C++ and using XML parser. Results are text outputs, eventually files in DOT language, which can be executed with GraphViz to generate graphs.
Signaling pathway, database KEGG, KGML, database BioCarta, PID (Pathway Interaction Database), Graphviz, Levenshtein distance, NCI (National Cancer Institute), NCBI (National Center for Biotechnology Information)
Herout Adam, prof. Ing., Ph.D. (DCGM FIT BUT), člen
Lukáš Roman, Ing., Ph.D. (DIFS FIT BUT), člen
Ráček Jaroslav, RNDr., Ph.D. (FI MUNI), člen
Vojnar Tomáš, prof. Ing., Ph.D. (DITS FIT BUT), člen
Zbořil František, doc. Ing., Ph.D. (DITS FIT BUT), člen
@bachelorsthesis{FITBT7028, author = "Pavel N\v{e}me\v{c}ek", type = "Bachelor's thesis", title = "Porovn\'{a}n\'{i} a p\v{r}evod datab\'{a}z\'{i} sign\'{a}ln\'{i}ch drah", school = "Brno University of Technology, Faculty of Information Technology", year = 2008, location = "Brno, CZ", language = "czech", url = "https://www.fit.vut.cz/study/thesis/7028/" }